#!/usr/bin/env nextflow
/*
 * Copyright 2020-2021, Seqera Labs
 * Copyright 2013-2019, Centre for Genomic Regulation (CRG)
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

params.events = 'create'
params.files = 'examples/data/*.fa'

fasta = Channel.watchPath(params.files, params.events);

process align {
  input:
  file fasta

  output:
  file aln

  """
  t_coffee -in $fasta 1> aln
  """

}


aln.subscribe {
  println '------'
  println it.text
}
